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    Structured Review

    ATCC sequencing
    Sequencing, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 3 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/virus+strains/Quantitative+Genomic+RNA+from+Influenza+A+virus+(H3N2)+strain+A%2FWisconsin%2F15%2F2009/pm42320401-34-8-13
    Average 94 stars, based on 3 article reviews
    sequencing - by Bioz Stars, 2026-09
    94/100 stars

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    Related Articles

    Purification:

    Article Title: Endogenous IFITMs boost SARS-coronavirus 1 and 2 replication whereas overexpression inhibits infection by relocalizing ACE2.
    Article Snippet: .. Antibodies IRDye 680RD Goat anti-Rabbit IgG (H + L) LI-COR Cat926-68071 IRDye 800CW Goat anti-Mouse IgG (H + L) LI-COR Cat# 926-32210 IRDye 800RD Goat anti-Rat IgG (H + L) LI-COR Cat# 925-32219 HCoV-229E Nucleocapsid Antibody SinoBiological Cat# 40640-T62 Anti-Coronavirus NL63 Ingenasa M.30.HCo.I2D4 Anti-Coronavirus Antibody, OC-43 strain Millipore Cat# MAB9012 Purified anti-GAPDH Antibody Biolegend Cat# 607902 Rabbit polyclonal anti-IFITM1 Cell signaling Cat# 13126 S Rabbit polyclonal anti-IFITM2 Cell signaling Cat# 13530S Rabbit polyclonal anti-IFITM3 Cell signaling Cat# 59212S V5-Tag (E9H8O) Mouse mAb Cell signaling Cat# 80076 SARS-CoV-2 (2019-nCoV) Nucleocapsid Antibody SinoBiological Cat# 40588-MM124 Rabbit polyclonal anti-ACE2 Abcam Cat# ab15348 Mouse monoclonal anti-flag Sigma-Aldrich Cat# F1804 Fixable Viability Dye eFluor 780 Thermo Fisher Cat# 65-0865-14 Rabbit monoclonal Alexa Fluor 647 anti-CD46 Abcam Cat# 275208 Rat Monoclonal PerCP-Cy5.5 anti-CD4 Biolegend Cat# 317428 Bacterial and virus strains VSVDG(GFP)*VSV-G Klaus Conzelmann N/A hCoV-229E ATCC Cat# VR-740TM hCoV-NL63 Lia van der Hoek N/A hCoV-OC43 ATCC Cat# CR-1558TM Renilla hCoV-229E Volker Thiel N/A BetaCoV/Netherlands/01/NL/2020 European Virus Archive Cat# 010V 03903 VSVDG(GFP)*VSV-G Klaus Conzelmann N/A BetaCoV/Netherlands/01/NL/2020 European Virus Archive Cat# 010V 03903 BetaCoV/B.1.617.2/Delta Florian Schmidt (University of Bonn) N/A BetaCoV/Munich/BavPat1/2020 GISAID; Wölfel et al., 202047 EPI_ISL_406862 SARS-CoV (rSCV, Frankfurt-1 virus isolate) Pfefferle et al., 200929 Genbank accession no. AY310120 rMERS-CoV, MERS-CoV/EMC2012 Muth et al., 201748 Genbank accession no. NC_019843.3 Chemicals, peptides, and recombinant proteins L-Glutamine Pan Biotech Cat# P04-80100 DAPI Sigma-Aldrich Cat# D9542-1MG; CAS: 28718-90-3 Dulbecco’s Modified Eagle Medium (DMEM) Gibco Cat# 41965039 Dulbecco’s Phosphate Buffered Saline (PBS) Thermo Fisher Cat# 14190094 Minimum Essential Medium Eagle (MEM) Sigma-Aldrich Cat# M4655 Opti-MEM Gibco Cat# M3942 Roswell Park Memorial Institute (RPMI) Gibco Cat# 22400089 Penicillin-Streptomycin Thermo Fisher Cat# 15140122 non-essential amino acids Sigma-Aldrich Cat# M7145 (Continued on next page) iScience 26, 106395, April 21, 2023 17 .. Sodium pyruvate Sigma-Aldrich Cat# S8636 FCS Gibco Cat# 10270106 Trypsin EDTA Gibco Cat# T3924 Versene Thermo Fisher Cat# 15040066 TMB peroxidase substrate (Sure blue) Medac Cat# 52-00-04 BD Cytofix/Cytoperm Fixation/Permeabilization Solution Kit BD Biosciences Cat# 554714 Lipofectamine RNAiMAX ThermoFisher Cat# 13778075 SuperScript III Platinum One-Step qRT-PCR Kit Invitrogen Cat# 11732088 Renilla Luciferase Assay kit Promega Cat# E2810 Quick RNA Miniprep Kit ZYMO research Cat# R1055 QIAamp Viral RNA Kits QIAGEN Cat# 52906 Luciferase Assay Kit Promega Cat# E1500 Mowiol 4-88 ROTH Cat# 0713.1 Blocker Casein in PBS Thermo Fisher Cat# 37528 TaqMan Fast Virus 1-Step Master Mix ThermoFisher Cat# 4444436 Tween 20 Sigma-Aldrich Cat# P7949500ML Triton X-100 Sigma-Aldrich Cat#T9284 100ML GAPD (GAPDH) Endogenous Control ThermoFisher Cat# 4352338E b-Mercaptoethanol Sigma-Aldrich Cat# 444203 Immobilon-FL PVDF membranes Merck Millipore Cat# IPVH00010 Paraformaldehyde Merck, Darmstadt Cat# 104005 TransIT-LT1 Mirus Cat# MIR2300 NuPAGE 4G12% Bis-Tris Gels ThermoFisher Cat# NP0321BOX Synthetic SARS-CoV-2-RNA Twist Bioscience Cat# 102019 RNAiMAX ThermoFisher Cat# LMRNA015 Recombinant IFN-a2 pbl assay science Cat# 11101-1 Recombinant IFN-b R&D systems Cat# 8499-IF-010 Recombinant IFN-g Sigma-Aldrich Cat# I3265 Recombinant IFN- l3 CHO Cat# 5259-IL-025 Cytochalasin D ThermoFisher Cat# PHZ1063 Agarose Sigma-Aldrich Cat# A9539 Experimental models: Cell lines Human: Calu-3 ATCC or M. Frick Cat# HTB-55 or N/A Human: Caco2 Holger Barth Human: Huh7.5 Ralf Bartenschlager Human: Huh7 Anna-Laura Kretz LLCMK2 by Lia van der Hoek

    Article Title: Extracellular vesicles from alveolar macrophages harboring phagocytosed methicillin-resistant Staphylococcus aureus induce necroptosis.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit anti-Phospho-RIPK3 Abcam Cat# ab222320; RRID: AB_2868434 Rabbit anti-Phospho-MLKL Abcam Cat# ab196436; RRID: AB_2687465 Rabbit anti-GSDMD Abcam Cat# ab209845; RRID: AB_2783550 Rabbit anti-CD63 Abcam Cat# ab217345; RRID: AB_2754982 Rabbit anti-Caspase1 Abcam Cat# ab179515; RRID: AB_2884954 Rabbit anti-ApoA1 Abcam Cat# ab300085 Rabbit anti-TSG101 ABclonal Cat# A5789; RRID: AB_2863517 Rabbit anti-TRAF6 ABclonal Cat# A16991; RRID: AB_2772697 Rabbit anti-CD9 ABclonal Cat# A1703; RRID: AB_2763755 Rabbit anti-Caspase 7 Abways Cat# CY5579 Rabbit anti-CD81 Affinity Cat# DF2306; RRID: AB_2839530 Rabbit anti-Phospho-RIPK1 Cell Signaling Technology Cat# 53286; RRID: AB_2925183 Rabbit anti-RIPK1 Cell Signaling Technology Cat# 3493; RRID: AB_2305314 Rabbit anti-RIPK3 Cell Signaling Technology Cat# 95702; RRID: AB_2721823 Rabbit anti-MLKL Cell Signaling Technology Cat# 37705; RRID: AB_2799118 Rabbit anti-TNF-a Cell Signaling Technology Cat# 11948; RRID: AB_2687962 Rabbit anti-Caspase3 Cell Signaling Technology Cat# 9662; RRID: AB_331439 Rabbit anti-Caspase8 Cell Signaling Technology Cat# 4790; RRID: AB_10545768 Rabbit anti-Flag Cell Signaling Technology Cat#14793; RRID: AB_2572291 Mouse anti-GAPDH Proteintech Cat# 60004-1-lg; RRID: AB_2919223 Goat anti-mouse lgG Absin Cat# abs20039; RRID: AB_3076309 Goat anti-rabbit lgG Absin Cat# abs20040; RRID: AB_2938713 Anti-mouse F4/80 Biolegend Cat# 123115; RRID: AB_893493 Anti-mouse Siglec-F Biolegend Cat# 155505; RRID: AB_2750235 Anti-mouse CD11b Biolegend Cat# 101212; RRID: AB_312795 Anti-mouse Ly6G Biolegend Cat# 127641; RRID: AB_2565881 Anti-mouse CD63 Biolegend Cat# 143905; RRID: AB_2565495 Rabbit anti-F4/80 Abcam Cat# ab300421; RRID: AB_2936298 Rabbit anti-p-MLKL Cell Signaling Technology Cat# 37333; RRID: AB_2799112 Rabbit anti- Prosurfactant Protein C Abcam Cat# ab211326; RRID: AB_2927746 Purified anti-CD9 Antibody Biolegend Cat# 124802; RRID: AB_1279332 iFluorTM 488 Conjugated goat anti-rabbit lgG Huabio Cat# HA1121 iFluorTM 594 Conjugated goat anti-rabbit lgG Huabio Cat# HA1122 iFluorTM 488 Phalloidin Yeasen Cat# 40736 Bacterial and virus strains USA300 ATCC Cat# BAA-1556 S. aureus ATCC Cat# 25923 Chemicals, peptides, and recombinant proteins DAPI Vector Cat# H-1200 Dynamin IN MedChemExpress Cat# HY-152215 FBS Gibco Cat# 10099158 GW4869 MedChemExpress Cat# HY-19363 INTERFERin Polyplus Transfection Cat# #382 (Continued on next page) Cell Reports 43, 114453, July 23, 2024 19 .. REAGENT or RESOURCE SOURCE IDENTIFIER Jetpei Polyplus Transfection Cat# #499 Latex beads Invitrogen Cat# A37304 Nonfat powdered milk Sangon Biotech Cat# A600669-0250 O. C. T Compound SAKURA Cat# 4583 Protease inhibitors Beyotime Cat# P1005 PKH26 Sigma Cat# MID126 Proteinase K MCE Cat# HY-108717 Recombinant mouse TNF-a ABclonal Cat# RP01702 RIPA lysis buffer Beyotime Cat# P0013E Red blood cell lysis buffer Solarbio Cat# R1010 RNase Solarbio Cat# R1030 SYBR Vazyme Cat# Q121-02 TNF-a antagonist MedChemExpress Cat# HY-110203 Type II collagenase Worthington Biochemical Cat# LS004177 RNAiso Plus Takara Cat# 9108 Vancomycin Sangon Biotech Cat# A600983 Critical commercial assays Annexin V-APC/PI Apoptosis Kit Multi Sciences Cat# AT107 CCK-8 Kit Fdbio Cat# FD3788 DABtunel Kit Haokebio Cat# HKI0012 Enhanced Chemiluminescence Substrate Kit NCM Biotech Cat# P10300 Gaussia Luciferase Assay Kit Beyotime Cat# RG021S HiFiScript cDNA Synthesis Kit CWBIO Cat# CW2569 Hairpin-itTM microRNA and U6 snRNA Normalization RT-PCR Quantitation Kit GenePharma Cat# E22001 PierceTM BCA Protein Assay Kit Thermo Fisher Cat# 23225 mmu-IL-1b ELISA Kit Abcam Cat# ab197742 mmu-IL-6 ELISA Kit Abcam Cat# ab222503 mmu-TNF-a ELISA Kit Abcam Cat# ab208348 Deposited data Proteomics data This paper iProX: PXD052452 miRNA-seq data This paper NCBI: PRJNA1113992 Experimental models: Cell lines MH-S cells ATCC ATCC CRL-2019 MLE12 cells ATCC ATCC CRL-2110 Experimental models: Organisms/strains Mouse: C57BL/6J Shanghai SLAC Laboratory Animal Co., Ltd. (Shanghai, China) N/A Oligonucleotides Primers for real-time PCR, see Table S1 This paper N/A miRNA mimics, see Table S1 This paper N/A siRNA, see Table S1 This paper N/A Recombinant DNA TRAF6 plasmid Miaoling Biology P19727 Wild-type pmir-GLO luciferase plasmids of TRAF6 3’ untranslated region GenePharma N/A Mutant pmir-GLO luciferase plasmids of TRAF6 3’ untranslated region GenePharma N/A (Continued on next page) 20 Cell Reports 43, 114453, July 23, 2024

    Virus:

    Article Title: Endogenous IFITMs boost SARS-coronavirus 1 and 2 replication whereas overexpression inhibits infection by relocalizing ACE2.
    Article Snippet: .. Antibodies IRDye 680RD Goat anti-Rabbit IgG (H + L) LI-COR Cat926-68071 IRDye 800CW Goat anti-Mouse IgG (H + L) LI-COR Cat# 926-32210 IRDye 800RD Goat anti-Rat IgG (H + L) LI-COR Cat# 925-32219 HCoV-229E Nucleocapsid Antibody SinoBiological Cat# 40640-T62 Anti-Coronavirus NL63 Ingenasa M.30.HCo.I2D4 Anti-Coronavirus Antibody, OC-43 strain Millipore Cat# MAB9012 Purified anti-GAPDH Antibody Biolegend Cat# 607902 Rabbit polyclonal anti-IFITM1 Cell signaling Cat# 13126 S Rabbit polyclonal anti-IFITM2 Cell signaling Cat# 13530S Rabbit polyclonal anti-IFITM3 Cell signaling Cat# 59212S V5-Tag (E9H8O) Mouse mAb Cell signaling Cat# 80076 SARS-CoV-2 (2019-nCoV) Nucleocapsid Antibody SinoBiological Cat# 40588-MM124 Rabbit polyclonal anti-ACE2 Abcam Cat# ab15348 Mouse monoclonal anti-flag Sigma-Aldrich Cat# F1804 Fixable Viability Dye eFluor 780 Thermo Fisher Cat# 65-0865-14 Rabbit monoclonal Alexa Fluor 647 anti-CD46 Abcam Cat# 275208 Rat Monoclonal PerCP-Cy5.5 anti-CD4 Biolegend Cat# 317428 Bacterial and virus strains VSVDG(GFP)*VSV-G Klaus Conzelmann N/A hCoV-229E ATCC Cat# VR-740TM hCoV-NL63 Lia van der Hoek N/A hCoV-OC43 ATCC Cat# CR-1558TM Renilla hCoV-229E Volker Thiel N/A BetaCoV/Netherlands/01/NL/2020 European Virus Archive Cat# 010V 03903 VSVDG(GFP)*VSV-G Klaus Conzelmann N/A BetaCoV/Netherlands/01/NL/2020 European Virus Archive Cat# 010V 03903 BetaCoV/B.1.617.2/Delta Florian Schmidt (University of Bonn) N/A BetaCoV/Munich/BavPat1/2020 GISAID; Wölfel et al., 202047 EPI_ISL_406862 SARS-CoV (rSCV, Frankfurt-1 virus isolate) Pfefferle et al., 200929 Genbank accession no. AY310120 rMERS-CoV, MERS-CoV/EMC2012 Muth et al., 201748 Genbank accession no. NC_019843.3 Chemicals, peptides, and recombinant proteins L-Glutamine Pan Biotech Cat# P04-80100 DAPI Sigma-Aldrich Cat# D9542-1MG; CAS: 28718-90-3 Dulbecco’s Modified Eagle Medium (DMEM) Gibco Cat# 41965039 Dulbecco’s Phosphate Buffered Saline (PBS) Thermo Fisher Cat# 14190094 Minimum Essential Medium Eagle (MEM) Sigma-Aldrich Cat# M4655 Opti-MEM Gibco Cat# M3942 Roswell Park Memorial Institute (RPMI) Gibco Cat# 22400089 Penicillin-Streptomycin Thermo Fisher Cat# 15140122 non-essential amino acids Sigma-Aldrich Cat# M7145 (Continued on next page) iScience 26, 106395, April 21, 2023 17 .. Sodium pyruvate Sigma-Aldrich Cat# S8636 FCS Gibco Cat# 10270106 Trypsin EDTA Gibco Cat# T3924 Versene Thermo Fisher Cat# 15040066 TMB peroxidase substrate (Sure blue) Medac Cat# 52-00-04 BD Cytofix/Cytoperm Fixation/Permeabilization Solution Kit BD Biosciences Cat# 554714 Lipofectamine RNAiMAX ThermoFisher Cat# 13778075 SuperScript III Platinum One-Step qRT-PCR Kit Invitrogen Cat# 11732088 Renilla Luciferase Assay kit Promega Cat# E2810 Quick RNA Miniprep Kit ZYMO research Cat# R1055 QIAamp Viral RNA Kits QIAGEN Cat# 52906 Luciferase Assay Kit Promega Cat# E1500 Mowiol 4-88 ROTH Cat# 0713.1 Blocker Casein in PBS Thermo Fisher Cat# 37528 TaqMan Fast Virus 1-Step Master Mix ThermoFisher Cat# 4444436 Tween 20 Sigma-Aldrich Cat# P7949500ML Triton X-100 Sigma-Aldrich Cat#T9284 100ML GAPD (GAPDH) Endogenous Control ThermoFisher Cat# 4352338E b-Mercaptoethanol Sigma-Aldrich Cat# 444203 Immobilon-FL PVDF membranes Merck Millipore Cat# IPVH00010 Paraformaldehyde Merck, Darmstadt Cat# 104005 TransIT-LT1 Mirus Cat# MIR2300 NuPAGE 4G12% Bis-Tris Gels ThermoFisher Cat# NP0321BOX Synthetic SARS-CoV-2-RNA Twist Bioscience Cat# 102019 RNAiMAX ThermoFisher Cat# LMRNA015 Recombinant IFN-a2 pbl assay science Cat# 11101-1 Recombinant IFN-b R&D systems Cat# 8499-IF-010 Recombinant IFN-g Sigma-Aldrich Cat# I3265 Recombinant IFN- l3 CHO Cat# 5259-IL-025 Cytochalasin D ThermoFisher Cat# PHZ1063 Agarose Sigma-Aldrich Cat# A9539 Experimental models: Cell lines Human: Calu-3 ATCC or M. Frick Cat# HTB-55 or N/A Human: Caco2 Holger Barth Human: Huh7.5 Ralf Bartenschlager Human: Huh7 Anna-Laura Kretz LLCMK2 by Lia van der Hoek

    Article Title: Methodic aspects of influenza and respiratory syncytial virus detection in raw wastewater and presence in treatment plants in southeastern Germany
    Article Snippet: .. Virus strains (IVA: H1N1pdm09; IVB: Victoria; RSV-A: ON1.1 18-3723; RSV-B: BA9-I 18–0564) were obtained from the Robert Koch-Institut, Berlin, Germany, and were propagated in HEp2 (MEM with GlutaMAX and 10% fetal bovine serum) and A549 cells (ATCC CCL-185, DMEM with GlutaMAX and 10% fetal bovine serum) according to standard procedures. ..

    Article Title: Novel methodologies for host-microbe interactions and microbiome-targeted therapeutics in 3D organotypic skin models.
    Article Snippet: .. Antibodies (Supplemental Table S2) Mouse monoclonal anti‐Filaggrin (clone FLG01) Thermo Fisher Scientific Cat#FLG01‐1 RRID:AB 2894828 Rabbit monoclonal anti‐Ki67 (clone SP6) Abcam Cat#ab16667, RRID:AB 302459 Mouse monoclonal anti‐Involucrin (clone Mon150) [48] N/A Mouse monoclonal anti‐Keratin 10 (clone DE‐K10) Abcam Cat# ab9026 RRID:AB 306950 Rabbit monoclonal anti‐SKALP/Elafin (clone 92‐1) [49] N/A Goat polyclonal anti‐ hBD2 Abcam Cat# ab9871, RRID:AB 296681 Bacterial and virus strains (Supplemental Table S3) Cutibacterium acnes ATCC ATCC‐6919 Staphylococcus epidermidis ATCC ATCC‐12228 Staphylococcus capitis Clinical isolate N/A Corynebacterium aurimucosum Clinical isolate N/A Staphylococcus aureus ATCC ATCC‐29213 Staphylococcus aureus Clinical isolate from AD skin (SA‐ DUS‐011) N/A Biological samples .. Chemicals CnT‐Prime Epithelial Proliferation Medium CELLnTEC Cat#CnT‐PR CnT‐Prime 3D Barrier Culture Medium CELLnTEC Cat#CnT‐PR‐3D

    Article Title: Vimentin inhibits type I interferon production by disrupting the TBK1-IKKε-IRF3 axis.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies anti-Flag-Rabbit SIGMA Cat#F7425-2MG; RRID: AB-2572291 anti-LaminB-Rabbit Solarbio Cat# K106482P- anti-HSV-1 Abcam Cat# ab6506 anti-IFNAR1-Rabbit Abcam Cat# ab124764 anti-Flag-Mouse SIGMA Cat# F1804-1MG anti-HA-Rabbit SIGMA Cat# SAB4300603 anti-HA-Mouse SIGMA Cat# HS658-2ML anti-GFP-Rabbit Proteintech Cat# 50430-2-AP anti-Vimentin-Rabbit Cell Signaling Technology Cat# 5741S anti-Vimentin-Mouse Abcam Cat#ab20346 anti-IRF3 Cell Signaling Technology Cat#4302; RRID: AB-1904036 anti-IRF3 phosphorylated at S396 Cell Signaling Technology Cat#4947; RRID: AB-823547 anti-TBK1 Cell Signaling Technology Cat#3504; RRID: AB-2255663 anti-TBK1 phosphorylated at S172 Cell Signaling Technology Cat#5483 anti-GAPDH Proteintech Group Cat#60004-1-Ig; RRID: AB-2107436 Anti-IKKε RD systems Cat#MAB3199 Alexa Flour 488 goat anti-rabbit IgG(H + L) Invitrogen Cat#A11008 Alexa Flour 633 goat anti-rabbit IgG(H + L) Invitrogen Cat#A21071 Alexa Flour 633 goat anti-mouse IgG(H + L) Invitrogen Cat#A21052 Alexa Flour 594 goat anti-mouse IgG(H + L) Invitrogen Cat#A11032 IRDye 800CW Goat anti-rabbit IgG (H + L) LI-COR Cat#926-32211 IRDye 800CW Goat anti-mouse IgG (H + L) LI-COR Cat#926-32210 Bacterial and virus strains The Sendai/Cantell strain ATCC ATCC VR-907 VSV-GFP Harbin Veterinary Research Institute N/A VSV-GFP Harbin Veterinary Research Institute N/A HSV-1-GFP Harbin Veterinary Research Institute N/A EMCV (HB10); GeneBank: JQ864080.1 Isolated from Pig N/A ADV Hanbio Biotechnology Co., Ltd. N/A Chemicals, peptides, and recombinant proteins anti-Flag (M2) beads Sigma-Aldrich Cat#M8823 Protein agarose A/G Santa Cruz Biotechnology Cat#20397 TRIzol reagent Invitrogen Cat#15596026 Poly(I:C) Sigma-Aldrich Cat#P1530 cGAMP Sigma-Aldrich Cat#SML1232-1EA Poly (dA:dT) Sigma-Aldrich Cat#P0883-10UN ISD Invitrogen Cat#tlrl-isdn protease inhibitor Cocktail Roche Cat#4693132001 Dulbecco’s Modified Eagle’s Medium (DMEM) GIBCO Cat#C11995500CP RPMI 1640 medium GIBCO Cat#C11875500CP fetal bovine serum (FBS) GIBCO Cat#10091-148 (Continued on next page) e1 Cell Reports 41, 111469, October 11, 2022 .. REAGENT or RESOURCE SOURCE IDENTIFIER Penicillin-Streptomycin Solution Hyclone Cat#SV30010 thioglycollate MERCK Cat#1.08191 Critical commercial assays Dual-Luciferase Reporter Assay System Promega Cat#E1910 PrimeScriptTM RT Reagent Kit Takara Cat# RR037A SYBR Premix Ex TaqTM II Takara Cat#RR820A Experimental models: Cell lines RAW264.7 RAW264.7 RAW264.7

    Article Title: Cross-neutralizing activity of the chikungunya vaccine VLA1553 against three prevalent chikungunya lineages.
    Article Snippet: .. Virus stocks were propagated in Vero cells (ATCC CCL-81) after rescue from plasmids containing the complete genome of the respective virus strains as described previously [12,24,25]. ..

    Article Title: Extracellular vesicles from alveolar macrophages harboring phagocytosed methicillin-resistant Staphylococcus aureus induce necroptosis.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit anti-Phospho-RIPK3 Abcam Cat# ab222320; RRID: AB_2868434 Rabbit anti-Phospho-MLKL Abcam Cat# ab196436; RRID: AB_2687465 Rabbit anti-GSDMD Abcam Cat# ab209845; RRID: AB_2783550 Rabbit anti-CD63 Abcam Cat# ab217345; RRID: AB_2754982 Rabbit anti-Caspase1 Abcam Cat# ab179515; RRID: AB_2884954 Rabbit anti-ApoA1 Abcam Cat# ab300085 Rabbit anti-TSG101 ABclonal Cat# A5789; RRID: AB_2863517 Rabbit anti-TRAF6 ABclonal Cat# A16991; RRID: AB_2772697 Rabbit anti-CD9 ABclonal Cat# A1703; RRID: AB_2763755 Rabbit anti-Caspase 7 Abways Cat# CY5579 Rabbit anti-CD81 Affinity Cat# DF2306; RRID: AB_2839530 Rabbit anti-Phospho-RIPK1 Cell Signaling Technology Cat# 53286; RRID: AB_2925183 Rabbit anti-RIPK1 Cell Signaling Technology Cat# 3493; RRID: AB_2305314 Rabbit anti-RIPK3 Cell Signaling Technology Cat# 95702; RRID: AB_2721823 Rabbit anti-MLKL Cell Signaling Technology Cat# 37705; RRID: AB_2799118 Rabbit anti-TNF-a Cell Signaling Technology Cat# 11948; RRID: AB_2687962 Rabbit anti-Caspase3 Cell Signaling Technology Cat# 9662; RRID: AB_331439 Rabbit anti-Caspase8 Cell Signaling Technology Cat# 4790; RRID: AB_10545768 Rabbit anti-Flag Cell Signaling Technology Cat#14793; RRID: AB_2572291 Mouse anti-GAPDH Proteintech Cat# 60004-1-lg; RRID: AB_2919223 Goat anti-mouse lgG Absin Cat# abs20039; RRID: AB_3076309 Goat anti-rabbit lgG Absin Cat# abs20040; RRID: AB_2938713 Anti-mouse F4/80 Biolegend Cat# 123115; RRID: AB_893493 Anti-mouse Siglec-F Biolegend Cat# 155505; RRID: AB_2750235 Anti-mouse CD11b Biolegend Cat# 101212; RRID: AB_312795 Anti-mouse Ly6G Biolegend Cat# 127641; RRID: AB_2565881 Anti-mouse CD63 Biolegend Cat# 143905; RRID: AB_2565495 Rabbit anti-F4/80 Abcam Cat# ab300421; RRID: AB_2936298 Rabbit anti-p-MLKL Cell Signaling Technology Cat# 37333; RRID: AB_2799112 Rabbit anti- Prosurfactant Protein C Abcam Cat# ab211326; RRID: AB_2927746 Purified anti-CD9 Antibody Biolegend Cat# 124802; RRID: AB_1279332 iFluorTM 488 Conjugated goat anti-rabbit lgG Huabio Cat# HA1121 iFluorTM 594 Conjugated goat anti-rabbit lgG Huabio Cat# HA1122 iFluorTM 488 Phalloidin Yeasen Cat# 40736 Bacterial and virus strains USA300 ATCC Cat# BAA-1556 S. aureus ATCC Cat# 25923 Chemicals, peptides, and recombinant proteins DAPI Vector Cat# H-1200 Dynamin IN MedChemExpress Cat# HY-152215 FBS Gibco Cat# 10099158 GW4869 MedChemExpress Cat# HY-19363 INTERFERin Polyplus Transfection Cat# #382 (Continued on next page) Cell Reports 43, 114453, July 23, 2024 19 .. REAGENT or RESOURCE SOURCE IDENTIFIER Jetpei Polyplus Transfection Cat# #499 Latex beads Invitrogen Cat# A37304 Nonfat powdered milk Sangon Biotech Cat# A600669-0250 O. C. T Compound SAKURA Cat# 4583 Protease inhibitors Beyotime Cat# P1005 PKH26 Sigma Cat# MID126 Proteinase K MCE Cat# HY-108717 Recombinant mouse TNF-a ABclonal Cat# RP01702 RIPA lysis buffer Beyotime Cat# P0013E Red blood cell lysis buffer Solarbio Cat# R1010 RNase Solarbio Cat# R1030 SYBR Vazyme Cat# Q121-02 TNF-a antagonist MedChemExpress Cat# HY-110203 Type II collagenase Worthington Biochemical Cat# LS004177 RNAiso Plus Takara Cat# 9108 Vancomycin Sangon Biotech Cat# A600983 Critical commercial assays Annexin V-APC/PI Apoptosis Kit Multi Sciences Cat# AT107 CCK-8 Kit Fdbio Cat# FD3788 DABtunel Kit Haokebio Cat# HKI0012 Enhanced Chemiluminescence Substrate Kit NCM Biotech Cat# P10300 Gaussia Luciferase Assay Kit Beyotime Cat# RG021S HiFiScript cDNA Synthesis Kit CWBIO Cat# CW2569 Hairpin-itTM microRNA and U6 snRNA Normalization RT-PCR Quantitation Kit GenePharma Cat# E22001 PierceTM BCA Protein Assay Kit Thermo Fisher Cat# 23225 mmu-IL-1b ELISA Kit Abcam Cat# ab197742 mmu-IL-6 ELISA Kit Abcam Cat# ab222503 mmu-TNF-a ELISA Kit Abcam Cat# ab208348 Deposited data Proteomics data This paper iProX: PXD052452 miRNA-seq data This paper NCBI: PRJNA1113992 Experimental models: Cell lines MH-S cells ATCC ATCC CRL-2019 MLE12 cells ATCC ATCC CRL-2110 Experimental models: Organisms/strains Mouse: C57BL/6J Shanghai SLAC Laboratory Animal Co., Ltd. (Shanghai, China) N/A Oligonucleotides Primers for real-time PCR, see Table S1 This paper N/A miRNA mimics, see Table S1 This paper N/A siRNA, see Table S1 This paper N/A Recombinant DNA TRAF6 plasmid Miaoling Biology P19727 Wild-type pmir-GLO luciferase plasmids of TRAF6 3’ untranslated region GenePharma N/A Mutant pmir-GLO luciferase plasmids of TRAF6 3’ untranslated region GenePharma N/A (Continued on next page) 20 Cell Reports 43, 114453, July 23, 2024

    Article Title: HEX17(Neumifil): An intranasal respiratory biotherapeutic with broad-acting antiviral activity.
    Article Snippet: HEp2:Npro cells were cultured in DMEM supplemented with 10% (v/v) FBS and 1% (v/v) penicillinstreptomycin (Pen-Strep; GIBCO). .. For the in vitro studies, the virus strains (influenza H1N1 [A/PR/8/34], influenza H3N2 [A/HK/8/68], human RSV-A2, HRV-1A and HRV-14) were all from ATCC. ..

    Article Title: Effective Search of Triterpenes with Anti-HSV-1 Activity Using a Classification Model by Logistic Regression
    Article Snippet: .. The anti-HSV-1 assay conditions for these data included incubation times of 12–48 h and cell types of HeLa cells, Vero cells, and virus strains of mainly KOS (ATCC ® VR1493), Strain F (ATCC ® VR-733), and 17 (GenBank acc. no. NC_001,806) and HSV-1 MI (ATCC ® VR-539), which were acyclovir-sensitive strain. .. With the threshold of activity set to 25 μ M, 166 active and 250 inactive compounds were defined ( ); shows the results of the PCA of active or inactive compounds collected from ChEMBL, DNP, and the original papers using 267 descriptors.

    Recombinant:

    Article Title: Endogenous IFITMs boost SARS-coronavirus 1 and 2 replication whereas overexpression inhibits infection by relocalizing ACE2.
    Article Snippet: .. Antibodies IRDye 680RD Goat anti-Rabbit IgG (H + L) LI-COR Cat926-68071 IRDye 800CW Goat anti-Mouse IgG (H + L) LI-COR Cat# 926-32210 IRDye 800RD Goat anti-Rat IgG (H + L) LI-COR Cat# 925-32219 HCoV-229E Nucleocapsid Antibody SinoBiological Cat# 40640-T62 Anti-Coronavirus NL63 Ingenasa M.30.HCo.I2D4 Anti-Coronavirus Antibody, OC-43 strain Millipore Cat# MAB9012 Purified anti-GAPDH Antibody Biolegend Cat# 607902 Rabbit polyclonal anti-IFITM1 Cell signaling Cat# 13126 S Rabbit polyclonal anti-IFITM2 Cell signaling Cat# 13530S Rabbit polyclonal anti-IFITM3 Cell signaling Cat# 59212S V5-Tag (E9H8O) Mouse mAb Cell signaling Cat# 80076 SARS-CoV-2 (2019-nCoV) Nucleocapsid Antibody SinoBiological Cat# 40588-MM124 Rabbit polyclonal anti-ACE2 Abcam Cat# ab15348 Mouse monoclonal anti-flag Sigma-Aldrich Cat# F1804 Fixable Viability Dye eFluor 780 Thermo Fisher Cat# 65-0865-14 Rabbit monoclonal Alexa Fluor 647 anti-CD46 Abcam Cat# 275208 Rat Monoclonal PerCP-Cy5.5 anti-CD4 Biolegend Cat# 317428 Bacterial and virus strains VSVDG(GFP)*VSV-G Klaus Conzelmann N/A hCoV-229E ATCC Cat# VR-740TM hCoV-NL63 Lia van der Hoek N/A hCoV-OC43 ATCC Cat# CR-1558TM Renilla hCoV-229E Volker Thiel N/A BetaCoV/Netherlands/01/NL/2020 European Virus Archive Cat# 010V 03903 VSVDG(GFP)*VSV-G Klaus Conzelmann N/A BetaCoV/Netherlands/01/NL/2020 European Virus Archive Cat# 010V 03903 BetaCoV/B.1.617.2/Delta Florian Schmidt (University of Bonn) N/A BetaCoV/Munich/BavPat1/2020 GISAID; Wölfel et al., 202047 EPI_ISL_406862 SARS-CoV (rSCV, Frankfurt-1 virus isolate) Pfefferle et al., 200929 Genbank accession no. AY310120 rMERS-CoV, MERS-CoV/EMC2012 Muth et al., 201748 Genbank accession no. NC_019843.3 Chemicals, peptides, and recombinant proteins L-Glutamine Pan Biotech Cat# P04-80100 DAPI Sigma-Aldrich Cat# D9542-1MG; CAS: 28718-90-3 Dulbecco’s Modified Eagle Medium (DMEM) Gibco Cat# 41965039 Dulbecco’s Phosphate Buffered Saline (PBS) Thermo Fisher Cat# 14190094 Minimum Essential Medium Eagle (MEM) Sigma-Aldrich Cat# M4655 Opti-MEM Gibco Cat# M3942 Roswell Park Memorial Institute (RPMI) Gibco Cat# 22400089 Penicillin-Streptomycin Thermo Fisher Cat# 15140122 non-essential amino acids Sigma-Aldrich Cat# M7145 (Continued on next page) iScience 26, 106395, April 21, 2023 17 .. Sodium pyruvate Sigma-Aldrich Cat# S8636 FCS Gibco Cat# 10270106 Trypsin EDTA Gibco Cat# T3924 Versene Thermo Fisher Cat# 15040066 TMB peroxidase substrate (Sure blue) Medac Cat# 52-00-04 BD Cytofix/Cytoperm Fixation/Permeabilization Solution Kit BD Biosciences Cat# 554714 Lipofectamine RNAiMAX ThermoFisher Cat# 13778075 SuperScript III Platinum One-Step qRT-PCR Kit Invitrogen Cat# 11732088 Renilla Luciferase Assay kit Promega Cat# E2810 Quick RNA Miniprep Kit ZYMO research Cat# R1055 QIAamp Viral RNA Kits QIAGEN Cat# 52906 Luciferase Assay Kit Promega Cat# E1500 Mowiol 4-88 ROTH Cat# 0713.1 Blocker Casein in PBS Thermo Fisher Cat# 37528 TaqMan Fast Virus 1-Step Master Mix ThermoFisher Cat# 4444436 Tween 20 Sigma-Aldrich Cat# P7949500ML Triton X-100 Sigma-Aldrich Cat#T9284 100ML GAPD (GAPDH) Endogenous Control ThermoFisher Cat# 4352338E b-Mercaptoethanol Sigma-Aldrich Cat# 444203 Immobilon-FL PVDF membranes Merck Millipore Cat# IPVH00010 Paraformaldehyde Merck, Darmstadt Cat# 104005 TransIT-LT1 Mirus Cat# MIR2300 NuPAGE 4G12% Bis-Tris Gels ThermoFisher Cat# NP0321BOX Synthetic SARS-CoV-2-RNA Twist Bioscience Cat# 102019 RNAiMAX ThermoFisher Cat# LMRNA015 Recombinant IFN-a2 pbl assay science Cat# 11101-1 Recombinant IFN-b R&D systems Cat# 8499-IF-010 Recombinant IFN-g Sigma-Aldrich Cat# I3265 Recombinant IFN- l3 CHO Cat# 5259-IL-025 Cytochalasin D ThermoFisher Cat# PHZ1063 Agarose Sigma-Aldrich Cat# A9539 Experimental models: Cell lines Human: Calu-3 ATCC or M. Frick Cat# HTB-55 or N/A Human: Caco2 Holger Barth Human: Huh7.5 Ralf Bartenschlager Human: Huh7 Anna-Laura Kretz LLCMK2 by Lia van der Hoek

    Article Title: Vimentin inhibits type I interferon production by disrupting the TBK1-IKKε-IRF3 axis.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies anti-Flag-Rabbit SIGMA Cat#F7425-2MG; RRID: AB-2572291 anti-LaminB-Rabbit Solarbio Cat# K106482P- anti-HSV-1 Abcam Cat# ab6506 anti-IFNAR1-Rabbit Abcam Cat# ab124764 anti-Flag-Mouse SIGMA Cat# F1804-1MG anti-HA-Rabbit SIGMA Cat# SAB4300603 anti-HA-Mouse SIGMA Cat# HS658-2ML anti-GFP-Rabbit Proteintech Cat# 50430-2-AP anti-Vimentin-Rabbit Cell Signaling Technology Cat# 5741S anti-Vimentin-Mouse Abcam Cat#ab20346 anti-IRF3 Cell Signaling Technology Cat#4302; RRID: AB-1904036 anti-IRF3 phosphorylated at S396 Cell Signaling Technology Cat#4947; RRID: AB-823547 anti-TBK1 Cell Signaling Technology Cat#3504; RRID: AB-2255663 anti-TBK1 phosphorylated at S172 Cell Signaling Technology Cat#5483 anti-GAPDH Proteintech Group Cat#60004-1-Ig; RRID: AB-2107436 Anti-IKKε RD systems Cat#MAB3199 Alexa Flour 488 goat anti-rabbit IgG(H + L) Invitrogen Cat#A11008 Alexa Flour 633 goat anti-rabbit IgG(H + L) Invitrogen Cat#A21071 Alexa Flour 633 goat anti-mouse IgG(H + L) Invitrogen Cat#A21052 Alexa Flour 594 goat anti-mouse IgG(H + L) Invitrogen Cat#A11032 IRDye 800CW Goat anti-rabbit IgG (H + L) LI-COR Cat#926-32211 IRDye 800CW Goat anti-mouse IgG (H + L) LI-COR Cat#926-32210 Bacterial and virus strains The Sendai/Cantell strain ATCC ATCC VR-907 VSV-GFP Harbin Veterinary Research Institute N/A VSV-GFP Harbin Veterinary Research Institute N/A HSV-1-GFP Harbin Veterinary Research Institute N/A EMCV (HB10); GeneBank: JQ864080.1 Isolated from Pig N/A ADV Hanbio Biotechnology Co., Ltd. N/A Chemicals, peptides, and recombinant proteins anti-Flag (M2) beads Sigma-Aldrich Cat#M8823 Protein agarose A/G Santa Cruz Biotechnology Cat#20397 TRIzol reagent Invitrogen Cat#15596026 Poly(I:C) Sigma-Aldrich Cat#P1530 cGAMP Sigma-Aldrich Cat#SML1232-1EA Poly (dA:dT) Sigma-Aldrich Cat#P0883-10UN ISD Invitrogen Cat#tlrl-isdn protease inhibitor Cocktail Roche Cat#4693132001 Dulbecco’s Modified Eagle’s Medium (DMEM) GIBCO Cat#C11995500CP RPMI 1640 medium GIBCO Cat#C11875500CP fetal bovine serum (FBS) GIBCO Cat#10091-148 (Continued on next page) e1 Cell Reports 41, 111469, October 11, 2022 .. REAGENT or RESOURCE SOURCE IDENTIFIER Penicillin-Streptomycin Solution Hyclone Cat#SV30010 thioglycollate MERCK Cat#1.08191 Critical commercial assays Dual-Luciferase Reporter Assay System Promega Cat#E1910 PrimeScriptTM RT Reagent Kit Takara Cat# RR037A SYBR Premix Ex TaqTM II Takara Cat#RR820A Experimental models: Cell lines RAW264.7 RAW264.7 RAW264.7

    Article Title: Extracellular vesicles from alveolar macrophages harboring phagocytosed methicillin-resistant Staphylococcus aureus induce necroptosis.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit anti-Phospho-RIPK3 Abcam Cat# ab222320; RRID: AB_2868434 Rabbit anti-Phospho-MLKL Abcam Cat# ab196436; RRID: AB_2687465 Rabbit anti-GSDMD Abcam Cat# ab209845; RRID: AB_2783550 Rabbit anti-CD63 Abcam Cat# ab217345; RRID: AB_2754982 Rabbit anti-Caspase1 Abcam Cat# ab179515; RRID: AB_2884954 Rabbit anti-ApoA1 Abcam Cat# ab300085 Rabbit anti-TSG101 ABclonal Cat# A5789; RRID: AB_2863517 Rabbit anti-TRAF6 ABclonal Cat# A16991; RRID: AB_2772697 Rabbit anti-CD9 ABclonal Cat# A1703; RRID: AB_2763755 Rabbit anti-Caspase 7 Abways Cat# CY5579 Rabbit anti-CD81 Affinity Cat# DF2306; RRID: AB_2839530 Rabbit anti-Phospho-RIPK1 Cell Signaling Technology Cat# 53286; RRID: AB_2925183 Rabbit anti-RIPK1 Cell Signaling Technology Cat# 3493; RRID: AB_2305314 Rabbit anti-RIPK3 Cell Signaling Technology Cat# 95702; RRID: AB_2721823 Rabbit anti-MLKL Cell Signaling Technology Cat# 37705; RRID: AB_2799118 Rabbit anti-TNF-a Cell Signaling Technology Cat# 11948; RRID: AB_2687962 Rabbit anti-Caspase3 Cell Signaling Technology Cat# 9662; RRID: AB_331439 Rabbit anti-Caspase8 Cell Signaling Technology Cat# 4790; RRID: AB_10545768 Rabbit anti-Flag Cell Signaling Technology Cat#14793; RRID: AB_2572291 Mouse anti-GAPDH Proteintech Cat# 60004-1-lg; RRID: AB_2919223 Goat anti-mouse lgG Absin Cat# abs20039; RRID: AB_3076309 Goat anti-rabbit lgG Absin Cat# abs20040; RRID: AB_2938713 Anti-mouse F4/80 Biolegend Cat# 123115; RRID: AB_893493 Anti-mouse Siglec-F Biolegend Cat# 155505; RRID: AB_2750235 Anti-mouse CD11b Biolegend Cat# 101212; RRID: AB_312795 Anti-mouse Ly6G Biolegend Cat# 127641; RRID: AB_2565881 Anti-mouse CD63 Biolegend Cat# 143905; RRID: AB_2565495 Rabbit anti-F4/80 Abcam Cat# ab300421; RRID: AB_2936298 Rabbit anti-p-MLKL Cell Signaling Technology Cat# 37333; RRID: AB_2799112 Rabbit anti- Prosurfactant Protein C Abcam Cat# ab211326; RRID: AB_2927746 Purified anti-CD9 Antibody Biolegend Cat# 124802; RRID: AB_1279332 iFluorTM 488 Conjugated goat anti-rabbit lgG Huabio Cat# HA1121 iFluorTM 594 Conjugated goat anti-rabbit lgG Huabio Cat# HA1122 iFluorTM 488 Phalloidin Yeasen Cat# 40736 Bacterial and virus strains USA300 ATCC Cat# BAA-1556 S. aureus ATCC Cat# 25923 Chemicals, peptides, and recombinant proteins DAPI Vector Cat# H-1200 Dynamin IN MedChemExpress Cat# HY-152215 FBS Gibco Cat# 10099158 GW4869 MedChemExpress Cat# HY-19363 INTERFERin Polyplus Transfection Cat# #382 (Continued on next page) Cell Reports 43, 114453, July 23, 2024 19 .. REAGENT or RESOURCE SOURCE IDENTIFIER Jetpei Polyplus Transfection Cat# #499 Latex beads Invitrogen Cat# A37304 Nonfat powdered milk Sangon Biotech Cat# A600669-0250 O. C. T Compound SAKURA Cat# 4583 Protease inhibitors Beyotime Cat# P1005 PKH26 Sigma Cat# MID126 Proteinase K MCE Cat# HY-108717 Recombinant mouse TNF-a ABclonal Cat# RP01702 RIPA lysis buffer Beyotime Cat# P0013E Red blood cell lysis buffer Solarbio Cat# R1010 RNase Solarbio Cat# R1030 SYBR Vazyme Cat# Q121-02 TNF-a antagonist MedChemExpress Cat# HY-110203 Type II collagenase Worthington Biochemical Cat# LS004177 RNAiso Plus Takara Cat# 9108 Vancomycin Sangon Biotech Cat# A600983 Critical commercial assays Annexin V-APC/PI Apoptosis Kit Multi Sciences Cat# AT107 CCK-8 Kit Fdbio Cat# FD3788 DABtunel Kit Haokebio Cat# HKI0012 Enhanced Chemiluminescence Substrate Kit NCM Biotech Cat# P10300 Gaussia Luciferase Assay Kit Beyotime Cat# RG021S HiFiScript cDNA Synthesis Kit CWBIO Cat# CW2569 Hairpin-itTM microRNA and U6 snRNA Normalization RT-PCR Quantitation Kit GenePharma Cat# E22001 PierceTM BCA Protein Assay Kit Thermo Fisher Cat# 23225 mmu-IL-1b ELISA Kit Abcam Cat# ab197742 mmu-IL-6 ELISA Kit Abcam Cat# ab222503 mmu-TNF-a ELISA Kit Abcam Cat# ab208348 Deposited data Proteomics data This paper iProX: PXD052452 miRNA-seq data This paper NCBI: PRJNA1113992 Experimental models: Cell lines MH-S cells ATCC ATCC CRL-2019 MLE12 cells ATCC ATCC CRL-2110 Experimental models: Organisms/strains Mouse: C57BL/6J Shanghai SLAC Laboratory Animal Co., Ltd. (Shanghai, China) N/A Oligonucleotides Primers for real-time PCR, see Table S1 This paper N/A miRNA mimics, see Table S1 This paper N/A siRNA, see Table S1 This paper N/A Recombinant DNA TRAF6 plasmid Miaoling Biology P19727 Wild-type pmir-GLO luciferase plasmids of TRAF6 3’ untranslated region GenePharma N/A Mutant pmir-GLO luciferase plasmids of TRAF6 3’ untranslated region GenePharma N/A (Continued on next page) 20 Cell Reports 43, 114453, July 23, 2024

    Modification:

    Article Title: Endogenous IFITMs boost SARS-coronavirus 1 and 2 replication whereas overexpression inhibits infection by relocalizing ACE2.
    Article Snippet: .. Antibodies IRDye 680RD Goat anti-Rabbit IgG (H + L) LI-COR Cat926-68071 IRDye 800CW Goat anti-Mouse IgG (H + L) LI-COR Cat# 926-32210 IRDye 800RD Goat anti-Rat IgG (H + L) LI-COR Cat# 925-32219 HCoV-229E Nucleocapsid Antibody SinoBiological Cat# 40640-T62 Anti-Coronavirus NL63 Ingenasa M.30.HCo.I2D4 Anti-Coronavirus Antibody, OC-43 strain Millipore Cat# MAB9012 Purified anti-GAPDH Antibody Biolegend Cat# 607902 Rabbit polyclonal anti-IFITM1 Cell signaling Cat# 13126 S Rabbit polyclonal anti-IFITM2 Cell signaling Cat# 13530S Rabbit polyclonal anti-IFITM3 Cell signaling Cat# 59212S V5-Tag (E9H8O) Mouse mAb Cell signaling Cat# 80076 SARS-CoV-2 (2019-nCoV) Nucleocapsid Antibody SinoBiological Cat# 40588-MM124 Rabbit polyclonal anti-ACE2 Abcam Cat# ab15348 Mouse monoclonal anti-flag Sigma-Aldrich Cat# F1804 Fixable Viability Dye eFluor 780 Thermo Fisher Cat# 65-0865-14 Rabbit monoclonal Alexa Fluor 647 anti-CD46 Abcam Cat# 275208 Rat Monoclonal PerCP-Cy5.5 anti-CD4 Biolegend Cat# 317428 Bacterial and virus strains VSVDG(GFP)*VSV-G Klaus Conzelmann N/A hCoV-229E ATCC Cat# VR-740TM hCoV-NL63 Lia van der Hoek N/A hCoV-OC43 ATCC Cat# CR-1558TM Renilla hCoV-229E Volker Thiel N/A BetaCoV/Netherlands/01/NL/2020 European Virus Archive Cat# 010V 03903 VSVDG(GFP)*VSV-G Klaus Conzelmann N/A BetaCoV/Netherlands/01/NL/2020 European Virus Archive Cat# 010V 03903 BetaCoV/B.1.617.2/Delta Florian Schmidt (University of Bonn) N/A BetaCoV/Munich/BavPat1/2020 GISAID; Wölfel et al., 202047 EPI_ISL_406862 SARS-CoV (rSCV, Frankfurt-1 virus isolate) Pfefferle et al., 200929 Genbank accession no. AY310120 rMERS-CoV, MERS-CoV/EMC2012 Muth et al., 201748 Genbank accession no. NC_019843.3 Chemicals, peptides, and recombinant proteins L-Glutamine Pan Biotech Cat# P04-80100 DAPI Sigma-Aldrich Cat# D9542-1MG; CAS: 28718-90-3 Dulbecco’s Modified Eagle Medium (DMEM) Gibco Cat# 41965039 Dulbecco’s Phosphate Buffered Saline (PBS) Thermo Fisher Cat# 14190094 Minimum Essential Medium Eagle (MEM) Sigma-Aldrich Cat# M4655 Opti-MEM Gibco Cat# M3942 Roswell Park Memorial Institute (RPMI) Gibco Cat# 22400089 Penicillin-Streptomycin Thermo Fisher Cat# 15140122 non-essential amino acids Sigma-Aldrich Cat# M7145 (Continued on next page) iScience 26, 106395, April 21, 2023 17 .. Sodium pyruvate Sigma-Aldrich Cat# S8636 FCS Gibco Cat# 10270106 Trypsin EDTA Gibco Cat# T3924 Versene Thermo Fisher Cat# 15040066 TMB peroxidase substrate (Sure blue) Medac Cat# 52-00-04 BD Cytofix/Cytoperm Fixation/Permeabilization Solution Kit BD Biosciences Cat# 554714 Lipofectamine RNAiMAX ThermoFisher Cat# 13778075 SuperScript III Platinum One-Step qRT-PCR Kit Invitrogen Cat# 11732088 Renilla Luciferase Assay kit Promega Cat# E2810 Quick RNA Miniprep Kit ZYMO research Cat# R1055 QIAamp Viral RNA Kits QIAGEN Cat# 52906 Luciferase Assay Kit Promega Cat# E1500 Mowiol 4-88 ROTH Cat# 0713.1 Blocker Casein in PBS Thermo Fisher Cat# 37528 TaqMan Fast Virus 1-Step Master Mix ThermoFisher Cat# 4444436 Tween 20 Sigma-Aldrich Cat# P7949500ML Triton X-100 Sigma-Aldrich Cat#T9284 100ML GAPD (GAPDH) Endogenous Control ThermoFisher Cat# 4352338E b-Mercaptoethanol Sigma-Aldrich Cat# 444203 Immobilon-FL PVDF membranes Merck Millipore Cat# IPVH00010 Paraformaldehyde Merck, Darmstadt Cat# 104005 TransIT-LT1 Mirus Cat# MIR2300 NuPAGE 4G12% Bis-Tris Gels ThermoFisher Cat# NP0321BOX Synthetic SARS-CoV-2-RNA Twist Bioscience Cat# 102019 RNAiMAX ThermoFisher Cat# LMRNA015 Recombinant IFN-a2 pbl assay science Cat# 11101-1 Recombinant IFN-b R&D systems Cat# 8499-IF-010 Recombinant IFN-g Sigma-Aldrich Cat# I3265 Recombinant IFN- l3 CHO Cat# 5259-IL-025 Cytochalasin D ThermoFisher Cat# PHZ1063 Agarose Sigma-Aldrich Cat# A9539 Experimental models: Cell lines Human: Calu-3 ATCC or M. Frick Cat# HTB-55 or N/A Human: Caco2 Holger Barth Human: Huh7.5 Ralf Bartenschlager Human: Huh7 Anna-Laura Kretz LLCMK2 by Lia van der Hoek

    Article Title: Vimentin inhibits type I interferon production by disrupting the TBK1-IKKε-IRF3 axis.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies anti-Flag-Rabbit SIGMA Cat#F7425-2MG; RRID: AB-2572291 anti-LaminB-Rabbit Solarbio Cat# K106482P- anti-HSV-1 Abcam Cat# ab6506 anti-IFNAR1-Rabbit Abcam Cat# ab124764 anti-Flag-Mouse SIGMA Cat# F1804-1MG anti-HA-Rabbit SIGMA Cat# SAB4300603 anti-HA-Mouse SIGMA Cat# HS658-2ML anti-GFP-Rabbit Proteintech Cat# 50430-2-AP anti-Vimentin-Rabbit Cell Signaling Technology Cat# 5741S anti-Vimentin-Mouse Abcam Cat#ab20346 anti-IRF3 Cell Signaling Technology Cat#4302; RRID: AB-1904036 anti-IRF3 phosphorylated at S396 Cell Signaling Technology Cat#4947; RRID: AB-823547 anti-TBK1 Cell Signaling Technology Cat#3504; RRID: AB-2255663 anti-TBK1 phosphorylated at S172 Cell Signaling Technology Cat#5483 anti-GAPDH Proteintech Group Cat#60004-1-Ig; RRID: AB-2107436 Anti-IKKε RD systems Cat#MAB3199 Alexa Flour 488 goat anti-rabbit IgG(H + L) Invitrogen Cat#A11008 Alexa Flour 633 goat anti-rabbit IgG(H + L) Invitrogen Cat#A21071 Alexa Flour 633 goat anti-mouse IgG(H + L) Invitrogen Cat#A21052 Alexa Flour 594 goat anti-mouse IgG(H + L) Invitrogen Cat#A11032 IRDye 800CW Goat anti-rabbit IgG (H + L) LI-COR Cat#926-32211 IRDye 800CW Goat anti-mouse IgG (H + L) LI-COR Cat#926-32210 Bacterial and virus strains The Sendai/Cantell strain ATCC ATCC VR-907 VSV-GFP Harbin Veterinary Research Institute N/A VSV-GFP Harbin Veterinary Research Institute N/A HSV-1-GFP Harbin Veterinary Research Institute N/A EMCV (HB10); GeneBank: JQ864080.1 Isolated from Pig N/A ADV Hanbio Biotechnology Co., Ltd. N/A Chemicals, peptides, and recombinant proteins anti-Flag (M2) beads Sigma-Aldrich Cat#M8823 Protein agarose A/G Santa Cruz Biotechnology Cat#20397 TRIzol reagent Invitrogen Cat#15596026 Poly(I:C) Sigma-Aldrich Cat#P1530 cGAMP Sigma-Aldrich Cat#SML1232-1EA Poly (dA:dT) Sigma-Aldrich Cat#P0883-10UN ISD Invitrogen Cat#tlrl-isdn protease inhibitor Cocktail Roche Cat#4693132001 Dulbecco’s Modified Eagle’s Medium (DMEM) GIBCO Cat#C11995500CP RPMI 1640 medium GIBCO Cat#C11875500CP fetal bovine serum (FBS) GIBCO Cat#10091-148 (Continued on next page) e1 Cell Reports 41, 111469, October 11, 2022 .. REAGENT or RESOURCE SOURCE IDENTIFIER Penicillin-Streptomycin Solution Hyclone Cat#SV30010 thioglycollate MERCK Cat#1.08191 Critical commercial assays Dual-Luciferase Reporter Assay System Promega Cat#E1910 PrimeScriptTM RT Reagent Kit Takara Cat# RR037A SYBR Premix Ex TaqTM II Takara Cat#RR820A Experimental models: Cell lines RAW264.7 RAW264.7 RAW264.7

    Saline:

    Article Title: Endogenous IFITMs boost SARS-coronavirus 1 and 2 replication whereas overexpression inhibits infection by relocalizing ACE2.
    Article Snippet: .. Antibodies IRDye 680RD Goat anti-Rabbit IgG (H + L) LI-COR Cat926-68071 IRDye 800CW Goat anti-Mouse IgG (H + L) LI-COR Cat# 926-32210 IRDye 800RD Goat anti-Rat IgG (H + L) LI-COR Cat# 925-32219 HCoV-229E Nucleocapsid Antibody SinoBiological Cat# 40640-T62 Anti-Coronavirus NL63 Ingenasa M.30.HCo.I2D4 Anti-Coronavirus Antibody, OC-43 strain Millipore Cat# MAB9012 Purified anti-GAPDH Antibody Biolegend Cat# 607902 Rabbit polyclonal anti-IFITM1 Cell signaling Cat# 13126 S Rabbit polyclonal anti-IFITM2 Cell signaling Cat# 13530S Rabbit polyclonal anti-IFITM3 Cell signaling Cat# 59212S V5-Tag (E9H8O) Mouse mAb Cell signaling Cat# 80076 SARS-CoV-2 (2019-nCoV) Nucleocapsid Antibody SinoBiological Cat# 40588-MM124 Rabbit polyclonal anti-ACE2 Abcam Cat# ab15348 Mouse monoclonal anti-flag Sigma-Aldrich Cat# F1804 Fixable Viability Dye eFluor 780 Thermo Fisher Cat# 65-0865-14 Rabbit monoclonal Alexa Fluor 647 anti-CD46 Abcam Cat# 275208 Rat Monoclonal PerCP-Cy5.5 anti-CD4 Biolegend Cat# 317428 Bacterial and virus strains VSVDG(GFP)*VSV-G Klaus Conzelmann N/A hCoV-229E ATCC Cat# VR-740TM hCoV-NL63 Lia van der Hoek N/A hCoV-OC43 ATCC Cat# CR-1558TM Renilla hCoV-229E Volker Thiel N/A BetaCoV/Netherlands/01/NL/2020 European Virus Archive Cat# 010V 03903 VSVDG(GFP)*VSV-G Klaus Conzelmann N/A BetaCoV/Netherlands/01/NL/2020 European Virus Archive Cat# 010V 03903 BetaCoV/B.1.617.2/Delta Florian Schmidt (University of Bonn) N/A BetaCoV/Munich/BavPat1/2020 GISAID; Wölfel et al., 202047 EPI_ISL_406862 SARS-CoV (rSCV, Frankfurt-1 virus isolate) Pfefferle et al., 200929 Genbank accession no. AY310120 rMERS-CoV, MERS-CoV/EMC2012 Muth et al., 201748 Genbank accession no. NC_019843.3 Chemicals, peptides, and recombinant proteins L-Glutamine Pan Biotech Cat# P04-80100 DAPI Sigma-Aldrich Cat# D9542-1MG; CAS: 28718-90-3 Dulbecco’s Modified Eagle Medium (DMEM) Gibco Cat# 41965039 Dulbecco’s Phosphate Buffered Saline (PBS) Thermo Fisher Cat# 14190094 Minimum Essential Medium Eagle (MEM) Sigma-Aldrich Cat# M4655 Opti-MEM Gibco Cat# M3942 Roswell Park Memorial Institute (RPMI) Gibco Cat# 22400089 Penicillin-Streptomycin Thermo Fisher Cat# 15140122 non-essential amino acids Sigma-Aldrich Cat# M7145 (Continued on next page) iScience 26, 106395, April 21, 2023 17 .. Sodium pyruvate Sigma-Aldrich Cat# S8636 FCS Gibco Cat# 10270106 Trypsin EDTA Gibco Cat# T3924 Versene Thermo Fisher Cat# 15040066 TMB peroxidase substrate (Sure blue) Medac Cat# 52-00-04 BD Cytofix/Cytoperm Fixation/Permeabilization Solution Kit BD Biosciences Cat# 554714 Lipofectamine RNAiMAX ThermoFisher Cat# 13778075 SuperScript III Platinum One-Step qRT-PCR Kit Invitrogen Cat# 11732088 Renilla Luciferase Assay kit Promega Cat# E2810 Quick RNA Miniprep Kit ZYMO research Cat# R1055 QIAamp Viral RNA Kits QIAGEN Cat# 52906 Luciferase Assay Kit Promega Cat# E1500 Mowiol 4-88 ROTH Cat# 0713.1 Blocker Casein in PBS Thermo Fisher Cat# 37528 TaqMan Fast Virus 1-Step Master Mix ThermoFisher Cat# 4444436 Tween 20 Sigma-Aldrich Cat# P7949500ML Triton X-100 Sigma-Aldrich Cat#T9284 100ML GAPD (GAPDH) Endogenous Control ThermoFisher Cat# 4352338E b-Mercaptoethanol Sigma-Aldrich Cat# 444203 Immobilon-FL PVDF membranes Merck Millipore Cat# IPVH00010 Paraformaldehyde Merck, Darmstadt Cat# 104005 TransIT-LT1 Mirus Cat# MIR2300 NuPAGE 4G12% Bis-Tris Gels ThermoFisher Cat# NP0321BOX Synthetic SARS-CoV-2-RNA Twist Bioscience Cat# 102019 RNAiMAX ThermoFisher Cat# LMRNA015 Recombinant IFN-a2 pbl assay science Cat# 11101-1 Recombinant IFN-b R&D systems Cat# 8499-IF-010 Recombinant IFN-g Sigma-Aldrich Cat# I3265 Recombinant IFN- l3 CHO Cat# 5259-IL-025 Cytochalasin D ThermoFisher Cat# PHZ1063 Agarose Sigma-Aldrich Cat# A9539 Experimental models: Cell lines Human: Calu-3 ATCC or M. Frick Cat# HTB-55 or N/A Human: Caco2 Holger Barth Human: Huh7.5 Ralf Bartenschlager Human: Huh7 Anna-Laura Kretz LLCMK2 by Lia van der Hoek

    Isolation:

    Article Title: Vimentin inhibits type I interferon production by disrupting the TBK1-IKKε-IRF3 axis.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies anti-Flag-Rabbit SIGMA Cat#F7425-2MG; RRID: AB-2572291 anti-LaminB-Rabbit Solarbio Cat# K106482P- anti-HSV-1 Abcam Cat# ab6506 anti-IFNAR1-Rabbit Abcam Cat# ab124764 anti-Flag-Mouse SIGMA Cat# F1804-1MG anti-HA-Rabbit SIGMA Cat# SAB4300603 anti-HA-Mouse SIGMA Cat# HS658-2ML anti-GFP-Rabbit Proteintech Cat# 50430-2-AP anti-Vimentin-Rabbit Cell Signaling Technology Cat# 5741S anti-Vimentin-Mouse Abcam Cat#ab20346 anti-IRF3 Cell Signaling Technology Cat#4302; RRID: AB-1904036 anti-IRF3 phosphorylated at S396 Cell Signaling Technology Cat#4947; RRID: AB-823547 anti-TBK1 Cell Signaling Technology Cat#3504; RRID: AB-2255663 anti-TBK1 phosphorylated at S172 Cell Signaling Technology Cat#5483 anti-GAPDH Proteintech Group Cat#60004-1-Ig; RRID: AB-2107436 Anti-IKKε RD systems Cat#MAB3199 Alexa Flour 488 goat anti-rabbit IgG(H + L) Invitrogen Cat#A11008 Alexa Flour 633 goat anti-rabbit IgG(H + L) Invitrogen Cat#A21071 Alexa Flour 633 goat anti-mouse IgG(H + L) Invitrogen Cat#A21052 Alexa Flour 594 goat anti-mouse IgG(H + L) Invitrogen Cat#A11032 IRDye 800CW Goat anti-rabbit IgG (H + L) LI-COR Cat#926-32211 IRDye 800CW Goat anti-mouse IgG (H + L) LI-COR Cat#926-32210 Bacterial and virus strains The Sendai/Cantell strain ATCC ATCC VR-907 VSV-GFP Harbin Veterinary Research Institute N/A VSV-GFP Harbin Veterinary Research Institute N/A HSV-1-GFP Harbin Veterinary Research Institute N/A EMCV (HB10); GeneBank: JQ864080.1 Isolated from Pig N/A ADV Hanbio Biotechnology Co., Ltd. N/A Chemicals, peptides, and recombinant proteins anti-Flag (M2) beads Sigma-Aldrich Cat#M8823 Protein agarose A/G Santa Cruz Biotechnology Cat#20397 TRIzol reagent Invitrogen Cat#15596026 Poly(I:C) Sigma-Aldrich Cat#P1530 cGAMP Sigma-Aldrich Cat#SML1232-1EA Poly (dA:dT) Sigma-Aldrich Cat#P0883-10UN ISD Invitrogen Cat#tlrl-isdn protease inhibitor Cocktail Roche Cat#4693132001 Dulbecco’s Modified Eagle’s Medium (DMEM) GIBCO Cat#C11995500CP RPMI 1640 medium GIBCO Cat#C11875500CP fetal bovine serum (FBS) GIBCO Cat#10091-148 (Continued on next page) e1 Cell Reports 41, 111469, October 11, 2022 .. REAGENT or RESOURCE SOURCE IDENTIFIER Penicillin-Streptomycin Solution Hyclone Cat#SV30010 thioglycollate MERCK Cat#1.08191 Critical commercial assays Dual-Luciferase Reporter Assay System Promega Cat#E1910 PrimeScriptTM RT Reagent Kit Takara Cat# RR037A SYBR Premix Ex TaqTM II Takara Cat#RR820A Experimental models: Cell lines RAW264.7 RAW264.7 RAW264.7

    Protease Inhibitor:

    Article Title: Vimentin inhibits type I interferon production by disrupting the TBK1-IKKε-IRF3 axis.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies anti-Flag-Rabbit SIGMA Cat#F7425-2MG; RRID: AB-2572291 anti-LaminB-Rabbit Solarbio Cat# K106482P- anti-HSV-1 Abcam Cat# ab6506 anti-IFNAR1-Rabbit Abcam Cat# ab124764 anti-Flag-Mouse SIGMA Cat# F1804-1MG anti-HA-Rabbit SIGMA Cat# SAB4300603 anti-HA-Mouse SIGMA Cat# HS658-2ML anti-GFP-Rabbit Proteintech Cat# 50430-2-AP anti-Vimentin-Rabbit Cell Signaling Technology Cat# 5741S anti-Vimentin-Mouse Abcam Cat#ab20346 anti-IRF3 Cell Signaling Technology Cat#4302; RRID: AB-1904036 anti-IRF3 phosphorylated at S396 Cell Signaling Technology Cat#4947; RRID: AB-823547 anti-TBK1 Cell Signaling Technology Cat#3504; RRID: AB-2255663 anti-TBK1 phosphorylated at S172 Cell Signaling Technology Cat#5483 anti-GAPDH Proteintech Group Cat#60004-1-Ig; RRID: AB-2107436 Anti-IKKε RD systems Cat#MAB3199 Alexa Flour 488 goat anti-rabbit IgG(H + L) Invitrogen Cat#A11008 Alexa Flour 633 goat anti-rabbit IgG(H + L) Invitrogen Cat#A21071 Alexa Flour 633 goat anti-mouse IgG(H + L) Invitrogen Cat#A21052 Alexa Flour 594 goat anti-mouse IgG(H + L) Invitrogen Cat#A11032 IRDye 800CW Goat anti-rabbit IgG (H + L) LI-COR Cat#926-32211 IRDye 800CW Goat anti-mouse IgG (H + L) LI-COR Cat#926-32210 Bacterial and virus strains The Sendai/Cantell strain ATCC ATCC VR-907 VSV-GFP Harbin Veterinary Research Institute N/A VSV-GFP Harbin Veterinary Research Institute N/A HSV-1-GFP Harbin Veterinary Research Institute N/A EMCV (HB10); GeneBank: JQ864080.1 Isolated from Pig N/A ADV Hanbio Biotechnology Co., Ltd. N/A Chemicals, peptides, and recombinant proteins anti-Flag (M2) beads Sigma-Aldrich Cat#M8823 Protein agarose A/G Santa Cruz Biotechnology Cat#20397 TRIzol reagent Invitrogen Cat#15596026 Poly(I:C) Sigma-Aldrich Cat#P1530 cGAMP Sigma-Aldrich Cat#SML1232-1EA Poly (dA:dT) Sigma-Aldrich Cat#P0883-10UN ISD Invitrogen Cat#tlrl-isdn protease inhibitor Cocktail Roche Cat#4693132001 Dulbecco’s Modified Eagle’s Medium (DMEM) GIBCO Cat#C11995500CP RPMI 1640 medium GIBCO Cat#C11875500CP fetal bovine serum (FBS) GIBCO Cat#10091-148 (Continued on next page) e1 Cell Reports 41, 111469, October 11, 2022 .. REAGENT or RESOURCE SOURCE IDENTIFIER Penicillin-Streptomycin Solution Hyclone Cat#SV30010 thioglycollate MERCK Cat#1.08191 Critical commercial assays Dual-Luciferase Reporter Assay System Promega Cat#E1910 PrimeScriptTM RT Reagent Kit Takara Cat# RR037A SYBR Premix Ex TaqTM II Takara Cat#RR820A Experimental models: Cell lines RAW264.7 RAW264.7 RAW264.7

    In Vitro:

    Article Title: HEX17(Neumifil): An intranasal respiratory biotherapeutic with broad-acting antiviral activity.
    Article Snippet: HEp2:Npro cells were cultured in DMEM supplemented with 10% (v/v) FBS and 1% (v/v) penicillinstreptomycin (Pen-Strep; GIBCO). .. For the in vitro studies, the virus strains (influenza H1N1 [A/PR/8/34], influenza H3N2 [A/HK/8/68], human RSV-A2, HRV-1A and HRV-14) were all from ATCC. ..

    Incubation:

    Article Title: Effective Search of Triterpenes with Anti-HSV-1 Activity Using a Classification Model by Logistic Regression
    Article Snippet: .. The anti-HSV-1 assay conditions for these data included incubation times of 12–48 h and cell types of HeLa cells, Vero cells, and virus strains of mainly KOS (ATCC ® VR1493), Strain F (ATCC ® VR-733), and 17 (GenBank acc. no. NC_001,806) and HSV-1 MI (ATCC ® VR-539), which were acyclovir-sensitive strain. .. With the threshold of activity set to 25 μ M, 166 active and 250 inactive compounds were defined ( ); shows the results of the PCA of active or inactive compounds collected from ChEMBL, DNP, and the original papers using 267 descriptors.



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    Differentiation of nasal airway cell cultures and impact of HRV and influenza infection on mediators of airway inflammation (IL-1β and IL-6) in an ex vivo model of nasal airways. Human nasal epithelial cells (HNECs) from three human donors were prepared and infected with HRV and H1N1 for 24 and 48 h, as described in the methods. (A) hNEC differentiation was confirmed by qPCR using four independent differentiation genes that are not expressed in non-ciliated basal undifferentiated cells (FOX-J1, CCP-110, CDHR3) and for MUC5AC as described in Methods. (B–E) Proinflammatory cytokines interleukin 1 beta (IL-1β) (B,C) and IL-6 (D,E) were determined by multiplex Luminex immunoassay in both apical (B,D) and basal (C,E) chambers of air-liquid interface (ALI) inserts as described in methods. All panels show summary data as mean ± standard error of the mean (SEM) from at least 3 biological replicates per donor. Three HNEC ALI cultures were prepared per human donor, and data from 3 donors are shown. Each data point represents the average of at least two technical replicates per one biological sample. Statistical comparisons between the uninfected control group and each experimental group were performed using a two-tailed Mann–Whitney test and are indicated by a blue asterisk. A statistical comparison between two non-control experimental groups was performed using a two-tailed Mann–Whitney test, and the result is indicated by a black asterisk. The p -value for each comparison is shown above each column (* p < 0.05, ** p < 0.01, *** p < 0.001). Alt Text: Graph and data showing measures of nasal airway differentiation and inflammation in human nasal airway cell culture models infected with influenza or human rhinovirus over 48 h compared to uninfected cell cultures.

    Journal: Frontiers in Microbiology

    Article Title: Ex vivo modeling of nasal epithelial airway inflammation in respiratory viral infections

    doi: 10.3389/fmicb.2026.1819581

    Figure Lengend Snippet: Differentiation of nasal airway cell cultures and impact of HRV and influenza infection on mediators of airway inflammation (IL-1β and IL-6) in an ex vivo model of nasal airways. Human nasal epithelial cells (HNECs) from three human donors were prepared and infected with HRV and H1N1 for 24 and 48 h, as described in the methods. (A) hNEC differentiation was confirmed by qPCR using four independent differentiation genes that are not expressed in non-ciliated basal undifferentiated cells (FOX-J1, CCP-110, CDHR3) and for MUC5AC as described in Methods. (B–E) Proinflammatory cytokines interleukin 1 beta (IL-1β) (B,C) and IL-6 (D,E) were determined by multiplex Luminex immunoassay in both apical (B,D) and basal (C,E) chambers of air-liquid interface (ALI) inserts as described in methods. All panels show summary data as mean ± standard error of the mean (SEM) from at least 3 biological replicates per donor. Three HNEC ALI cultures were prepared per human donor, and data from 3 donors are shown. Each data point represents the average of at least two technical replicates per one biological sample. Statistical comparisons between the uninfected control group and each experimental group were performed using a two-tailed Mann–Whitney test and are indicated by a blue asterisk. A statistical comparison between two non-control experimental groups was performed using a two-tailed Mann–Whitney test, and the result is indicated by a black asterisk. The p -value for each comparison is shown above each column (* p < 0.05, ** p < 0.01, *** p < 0.001). Alt Text: Graph and data showing measures of nasal airway differentiation and inflammation in human nasal airway cell culture models infected with influenza or human rhinovirus over 48 h compared to uninfected cell cultures.

    Article Snippet: Human rhinovirus 16 strain 11757 (Cat# VR-283), and Influenza A virus (H1N1) strain A/PR/8/34 (Cat# VR-95) were procured from ATCC.

    Techniques: Infection, Ex Vivo, Multiplex Assay, Luminex, Control, Two Tailed Test, MANN-WHITNEY, Comparison, Cell Culture

    Impact of HRV and influenza infection on mediators of airway inflammation (IL-8, IL-10) in an ex vivo model of nasal airways. Human nasal epithelial cells (HNECs) from three human donors were prepared and infected with HRV and H1N1 for 24 and 48 h, as described in the methods. (A–D) Proinflammatory cytokines interleukin 8 (IL-8 (A,B) and IL-10 (C,D) were determined by multiplex Luminex immunoassay in both the apical (A,C) and basal (B,D) chambers of air-liquid interface (ALI) inserts, as described in the methods. All panels show summary data as the mean ± standard error of the mean (SEM) from at least 3 biological replicates per donor. Three HNEC ALI cultures were prepared per human donor, and data from 3 donors are shown. Each data point represents the average of at least two technical replicates per one biological sample. Statistical comparison between the uninfected control group and each experimental group was performed using a two-tailed Mann–Whitney test and is indicated by a blue asterisk. A statistical comparison between two non-control experimental groups was performed using a two-tailed Mann–Whitney test and is indicated by a black asterisk. The p -value for each comparison is shown above each column (* p < 0.05, ** p < 0.01, *** p < 0.001). Alt Text: Graph and data showing measures of nasal airway inflammation in human nasal airway cell culture models infected with influenza or human rhinovirus over 48 h compared to uninfected cell cultures.

    Journal: Frontiers in Microbiology

    Article Title: Ex vivo modeling of nasal epithelial airway inflammation in respiratory viral infections

    doi: 10.3389/fmicb.2026.1819581

    Figure Lengend Snippet: Impact of HRV and influenza infection on mediators of airway inflammation (IL-8, IL-10) in an ex vivo model of nasal airways. Human nasal epithelial cells (HNECs) from three human donors were prepared and infected with HRV and H1N1 for 24 and 48 h, as described in the methods. (A–D) Proinflammatory cytokines interleukin 8 (IL-8 (A,B) and IL-10 (C,D) were determined by multiplex Luminex immunoassay in both the apical (A,C) and basal (B,D) chambers of air-liquid interface (ALI) inserts, as described in the methods. All panels show summary data as the mean ± standard error of the mean (SEM) from at least 3 biological replicates per donor. Three HNEC ALI cultures were prepared per human donor, and data from 3 donors are shown. Each data point represents the average of at least two technical replicates per one biological sample. Statistical comparison between the uninfected control group and each experimental group was performed using a two-tailed Mann–Whitney test and is indicated by a blue asterisk. A statistical comparison between two non-control experimental groups was performed using a two-tailed Mann–Whitney test and is indicated by a black asterisk. The p -value for each comparison is shown above each column (* p < 0.05, ** p < 0.01, *** p < 0.001). Alt Text: Graph and data showing measures of nasal airway inflammation in human nasal airway cell culture models infected with influenza or human rhinovirus over 48 h compared to uninfected cell cultures.

    Article Snippet: Human rhinovirus 16 strain 11757 (Cat# VR-283), and Influenza A virus (H1N1) strain A/PR/8/34 (Cat# VR-95) were procured from ATCC.

    Techniques: Infection, Ex Vivo, Multiplex Assay, Luminex, Comparison, Control, Two Tailed Test, MANN-WHITNEY, Cell Culture

    Impact of HRV and influenza infection on mediators of airway inflammation (TNF-α, VEGF) in an ex vivo model of nasal airways. Human nasal epithelial cells (HNECs) from three human donors were prepared and infected with HRV and H1N1 for 24 and 48 h, as described in the methods. (A–D) Proinflammatory cytokines, tumor necrosis factor alpha (TNF-α) (A,B) and Vascular endothelial growth factor (VEGF) (C,D) , were determined by multiplex Luminex immunoassay in both the apical (A,C) and basal (B,D) chambers of air-liquid interface (ALI) inserts, as described in the methods. All panels show summary data as the mean ± standard error of the mean (SEM) from at least 3 biological replicates per donor. Three HNEC ALI cultures were prepared per human donor, and data from 3 donors are shown. Each data point represents the average of at least two technical replicates per one biological sample. Statistical comparison between the uninfected control group and each experimental group was performed using a two-tailed Mann–Whitney test and is indicated by a blue asterisk. A statistical comparison between two non-control experimental groups was performed using a two-tailed Mann–Whitney test and is indicated by a black asterisk. The p -value for each comparison is shown above each column (* p < 0.05, ** p < 0.01, *** p < 0.001). Alt Text: Graph and data showing measures of nasal airway inflammation in human nasal airway cell culture models infected with influenza or human rhinovirus over 48 h compared to uninfected cell cultures.

    Journal: Frontiers in Microbiology

    Article Title: Ex vivo modeling of nasal epithelial airway inflammation in respiratory viral infections

    doi: 10.3389/fmicb.2026.1819581

    Figure Lengend Snippet: Impact of HRV and influenza infection on mediators of airway inflammation (TNF-α, VEGF) in an ex vivo model of nasal airways. Human nasal epithelial cells (HNECs) from three human donors were prepared and infected with HRV and H1N1 for 24 and 48 h, as described in the methods. (A–D) Proinflammatory cytokines, tumor necrosis factor alpha (TNF-α) (A,B) and Vascular endothelial growth factor (VEGF) (C,D) , were determined by multiplex Luminex immunoassay in both the apical (A,C) and basal (B,D) chambers of air-liquid interface (ALI) inserts, as described in the methods. All panels show summary data as the mean ± standard error of the mean (SEM) from at least 3 biological replicates per donor. Three HNEC ALI cultures were prepared per human donor, and data from 3 donors are shown. Each data point represents the average of at least two technical replicates per one biological sample. Statistical comparison between the uninfected control group and each experimental group was performed using a two-tailed Mann–Whitney test and is indicated by a blue asterisk. A statistical comparison between two non-control experimental groups was performed using a two-tailed Mann–Whitney test and is indicated by a black asterisk. The p -value for each comparison is shown above each column (* p < 0.05, ** p < 0.01, *** p < 0.001). Alt Text: Graph and data showing measures of nasal airway inflammation in human nasal airway cell culture models infected with influenza or human rhinovirus over 48 h compared to uninfected cell cultures.

    Article Snippet: Human rhinovirus 16 strain 11757 (Cat# VR-283), and Influenza A virus (H1N1) strain A/PR/8/34 (Cat# VR-95) were procured from ATCC.

    Techniques: Infection, Ex Vivo, Multiplex Assay, Luminex, Comparison, Control, Two Tailed Test, MANN-WHITNEY, Cell Culture

    Impact of HRV and influenza infection on secretion of proinflammatory cytokines in apical versus basal surface in ex vivo model of nasal airways. Human nasal epithelial cells (HNECs) from three human donors were prepared and infected with HRV and H1N1 for 24 (A) and 48 (B) h, as described in the methods. The mean value of each protein measurement in each apical cell culture supernatant was normalized to the mean value of protein content in the same basal cell culture supernatant of the same ALI well. All panels show summary data as the mean ± standard error of the mean (SEM) from at least 3 biological replicates per donor. Three HNEC ALI cultures were prepared per human donor, and data from 3 donors are shown. Each data point represents the average of at least two technical replicates per one biological sample. Statistical comparison between the uninfected control group and each experimental group was performed using a two-tailed Mann–Whitney test and is indicated by a blue asterisk. A statistical comparison between two non-control experimental groups was performed using a two-tailed Mann–Whitney test, and the result is indicated by a black asterisk. The p -value for each comparison is shown above each column (* p < 0.05, ** p < 0.01, *** p < 0.001). Alt Text: Graph and data showing measures of nasal airway inflammation in apical versus basal surfaces of human nasal airway cell culture models infected with influenza or human rhinovirus over 48 h compared to uninfected cell cultures.

    Journal: Frontiers in Microbiology

    Article Title: Ex vivo modeling of nasal epithelial airway inflammation in respiratory viral infections

    doi: 10.3389/fmicb.2026.1819581

    Figure Lengend Snippet: Impact of HRV and influenza infection on secretion of proinflammatory cytokines in apical versus basal surface in ex vivo model of nasal airways. Human nasal epithelial cells (HNECs) from three human donors were prepared and infected with HRV and H1N1 for 24 (A) and 48 (B) h, as described in the methods. The mean value of each protein measurement in each apical cell culture supernatant was normalized to the mean value of protein content in the same basal cell culture supernatant of the same ALI well. All panels show summary data as the mean ± standard error of the mean (SEM) from at least 3 biological replicates per donor. Three HNEC ALI cultures were prepared per human donor, and data from 3 donors are shown. Each data point represents the average of at least two technical replicates per one biological sample. Statistical comparison between the uninfected control group and each experimental group was performed using a two-tailed Mann–Whitney test and is indicated by a blue asterisk. A statistical comparison between two non-control experimental groups was performed using a two-tailed Mann–Whitney test, and the result is indicated by a black asterisk. The p -value for each comparison is shown above each column (* p < 0.05, ** p < 0.01, *** p < 0.001). Alt Text: Graph and data showing measures of nasal airway inflammation in apical versus basal surfaces of human nasal airway cell culture models infected with influenza or human rhinovirus over 48 h compared to uninfected cell cultures.

    Article Snippet: Human rhinovirus 16 strain 11757 (Cat# VR-283), and Influenza A virus (H1N1) strain A/PR/8/34 (Cat# VR-95) were procured from ATCC.

    Techniques: Infection, Ex Vivo, Cell Culture, Comparison, Control, Two Tailed Test, MANN-WHITNEY